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VPH NoE ToolKit

Category: Methods

While tools are crucial for performing research, perhaps even more important are the techniques and best practices for doing so most effectively. This section aims particularly to disseminate knowledge in this arena. It discusses approaches to VPH research that will enable an integrative approach to biomedical research to be achieved, where biological processes are described from a systems point of view.

Markup and Modelling Languages

Markup and Modelling Languages (4/- )

How to represent VPH models

Ontologies

Ontologies (1/- )

Essential techniques for interoperability

Data Standards

Data Standards (1/- )

Formats for VPH data

ToolKit Guidelines (9/- )

Guidelines for high quality ToolKit content

 
 CellML Hot 0Reviews: 0
Date added: 3.7.2009  Version:  1.1   mature Hits: 212
Submitter: randall  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License: 
Target user group: Any
Website:  Tool website Technology type: Modelling language
Tags: cellml,  markup language,  XML,  modelling language Categories: Markup and Modelling Languages

Markup language for biophysical lumped parameter models.

 The Open Provenance Model (OPM) Hot 0Reviews: 0
Date added: 13.7.2011  Version:  OPM v1.1   mature Hits: 163
Submitter: jfenner  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License: 
Target user group: Any
Website:  Tool website Technology type: Other
Tags: Provenance,  governance,  XML,  standard Categories: Data Standards

The Open Provenance Model defines a standard that supports exchange of provenance information between systems, tools, data.

 SBML Hot 0Reviews: 0
Date added: 21.7.2009  Version:  L2v4r1   mature Hits: 94
Submitter: jcooper  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License: 
Target user group: Any
Website:  Tool website Technology type: Modelling language
Tags: SBML,  XML,  modelling language,  modelling,  markup language,   Categories: Markup and Modelling Languages

The Systems Biology Markup Language (SBML) is a computer-readable format for representing models of biological processes.

 SED-ML Hot 0Reviews: 0
Date added: 31.7.2010  Version:     beta Hits: 72
Submitter: jcooper  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License: 
Target user group: Researchers
Website:  Tool website Technology type: Modelling language
Tags: biomodels,  markup language,  simulation Categories: Markup and Modelling Languages

The Simulation Experiment Description Markup Language (SED-ML) is an XML-based format for encoding simulation experiments, following the requirements defined in the MIASE guidelines.

 Interoperability Guideline Hot 0Reviews: 0
Date added: 24.6.2011  Version:  1.0    Hits: 60
Submitter: wp3  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License: 
Target user group: Any
Website:  Tool website Technology type: Other
Tags: guidelines Categories: ToolKit Guidelines

Key attributes and methods for enabling ToolKit content to be utilised in concert within a multistage workflow

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