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guidelines simulation cellml dicom video conferencing grid audio conferencing middleware data fusion workflow visualization analysis framework finite element cardiac electrophysiology image visualisation imaging systems biology java segmentation parallel repository user interface markup language modelling medical images fluid dynamics soft tissue fluid structure interaction volume rendering registration modeling diffusion modelling language molecular simulations data sbml nifti distributed computing molecular dynamics software gpu computing solver deisa viewer models statistics cocoa high performance productivity framework based gnustep renal physiome kidney parameter database agile electromechanics ontology cancer discrete designing pathways biological edition test driven networks regulatory gene dynamical boolean systems automata neural processing medical images browser boinc access grid microsecond simulations data repository lhdl chat nonlinear equation rheology fusion modular fortran plugin linear algebra egee super computer aecg aneurysm collaborative meeting facility converter cardiotek curation linear equation network analysis data integration visualization tensor tracking filtering meshes images imaging informatics file management quality assurance computer vision opencv graphing visualization data analysis network analysis link analysis image processing multiphysics solver conservation element and solution element cese cleansing filteration physiome jsim numerical model c++ library partial differential equations pde image processing algorithms pipelines multiformalism vessels centerlines bifurcations geometry morphology mesh generation multiresolution c++ library multiscale c++ alignment hemodynamics vascular network modelling solver end user editor pacs connection development environment nonlinear node metrics febio grayscale networks vasculature tortuosity vessels network metrics brain network threshold electrocardiology anatomist brain mesh generation biomechanical simulations fmri structure dynamics surgical navigations meshing transport in porous media mass transport heat transfer library bioprocessing rstats dynamic biodata analyze oncology biojava bioinformatics perfusion interactve 3d images medical cross compilator kitware open source livewire multiplatform paraview mesh bio informatics code generators application development framework ide cross platform rendering temporal data medical science apps mesh visualisation molecular visualization animating graphics scripting gsengine viewers database presentation metadata annotation debuggers portal portlet chaste workflows webgl ontologies dae solver ode solver graphical interface or text input for model definition physics based animations collision detection medical simulation collision response deformations cvrg cardiovascular grid tools ontologies data integration pacs loni tools data brain atlas imaging visualization web services real time realistic rendering provenance governance standard 2d and 3d cfd lattice boltzmann method fluid flows shared desktop fuse musculo skeletal import time varying signals finite element analysis results gait analysis data dicom format biomedical data store biochemical reaction network biomodels plotting bidomain agent methods ontology systems_biology modeling soft tissue modelling medical images dicom processing visualization framework medical images browser test driven cellml ecg aecg hl7 cardiotek converter

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VPH NoE ToolKit

Category: Solvers

A major component of VPH work is performing in silico experiments. The needs and tools available are correspondingly many, and varied, due to the range of systems and scales under study.

This category includes the underlying numerical libraries used for simulation, as well as larger frameworks and user-facing simulation packages.

Adun Adun Hot  0Reviews: 0
Date added: 17.8.2009  Version:  0.81   alpha Hits: 396
Submitter: J Villa  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License:  GPL v2
Supported platform:  macintosh linux Target user group: Researchers; Students
Website:  Tool website Technology type: Software
Tags: molecular simulations,  high performance productivity,  framework based,  Cocoa,  GNUstep Categories: Collaborative Tools | Solvers | Analysis | Converters | Tools for accessing compute resources

Adun is a new extendible molecular simulation program that also includes data management and analysis capabilities.

 OpenLB Hot  0Reviews: 0
Date added: 25.3.2011  Version:     pre-release Hits: 322
Submitter: Mathias  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License:  GPL v2
Supported platform:  linux Target user group: Researchers; Students
Website:  Tool website Technology type: Software
Tags: Lattice Boltzmann Method,  CFD,  2D and 3D CFD,  Fluid Flows Categories: Solvers | Analysis | Editors

The OpenLB project aims at setting up an open source implementation of lattice Boltzmann methods (LBM) in an object oriented framework. The code is written in C++ and intended to be used both by application programmers and by developers who may add their own particular dynamics. It supports advanced data structure that take into account complex geometries and parallel program executions. The programming concepts strongly rely on dynamic genericity via the use of object oriented interfaces as well as static genericity by means of templates. This design allows an efficient, straightforward and intuitive implementation of LBM. It is cross-verified for software quality by several reviewers and is presented along with a user guide. To the knowledge of the authors, the OpenLB project is the first attempt to produce a generic platform for LB programming and to share it with the community via a system of open source contributions.

ACEMD ACEMD Hot  10Reviews: 0
Date added: 13.8.2009  Version:  1.1   mature Hits: 289
Submitter: WP3 team  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License:  Commercial
Supported platform:  windows linux Target user group: Researchers
Website:  Tool website Technology type: Software
Tags: molecular dynamics software,  GPU computing,  microsecond simulations Categories: Solvers

ACEMD is a production bio-molecular dynamics software specially optimized to run on graphics processing units (GPUs).

 Chaste Hot  10Reviews: 0
Date added: 21.7.2009  Version:  2.3   mature Hits: 285
Submitter: Jonathan Cooper  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License:  LGPL v2.1
Supported platform:  linux Target user group: Researchers
Website:  Tool website Technology type: Software
Tags: cardiac,  electrophysiology,  soft-tissue,  modelling,  simulation,   Categories: Solvers

Chaste (Cancer, Heart and Soft Tissue Environment) is a general purpose simulation package aimed at multi-scale, computationally demanding problems arising in biology and physiology.

 Activ8 Hot  0Reviews: 0
Date added: 28.5.2010  Version:  1.0   pre-release Hits: 193
Submitter: James Dalton  This e-mail address is being protected from spambots. You need JavaScript enabled to view it  Web Site License:  Free for Academic use
Supported platform:  windows macintosh linux Target user group: Clinicians; Researchers; Any
Website:  Tool website Technology type: Software
Categories: Data Fusion | Solvers | Analysis | Workflow | Development environments/platforms

Activa8 is a 3-D graphical platform integrating knowledge related to various parts and processes of the human body from a systemic approach and understanding of pathophysiology.

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