Latest entries
Tag cloud
guidelines simulation cellml video conferencing grid audio conferencing dicom middleware data fusion workflow analysis finite element cardiac electrophysiology image systems biology visualization framework java segmentation parallel repository user interface markup language modelling soft tissue fluid dynamics fluid structure interaction modeling imaging modelling language molecular simulations sbml data nifti distributed computing molecular dynamics software gpu computing solver deisa models statistics visualisation cocoa framework based high performance productivity gnustep parameter database renal physiome kidney gene dynamical systems biological edition networks test driven neural electromechanics cancer boolean regulatory automata ontology designing pathways agile discrete processing medical images medical images browser boinc access grid microsecond simulations lhdl data repository chat collaborative meeting facility linear equation rheology plugin modular aneurysm aecg fortran fusion curation cardiotek converter nonlinear equation linear algebra egee super computer network analysis data integration visualization imaging informatics file management quality assurance image processing computer vision opencv graphing visualization data analysis network analysis link analysis multiphysics solver conservation element and solution element cese filteration cleansing jsim numerical model physiome multiscale c++ registration vessels centerlines bifurcations geometry morphology mesh generation multiresolution multiformalism alignment hemodynamics vascular network modelling solver end user editor development environment febio nonlinear threshold vessels vasculature brain network network metrics node metrics grayscale networks tortuosity meshing anatomist biojava structure dynamics transport in porous media electrocardiology bioinformatics fmri biodata library bioprocessing heat transfer mesh generation mass transport brain diffusion oncology dynamic perfusion analyze rstats medical interactve livewire cross compilator multiplatform open source kitware paraview 3d images mesh annotation metadata database gsengine application development framework ide cross platform portlet chaste portal workflows webgl ontologies deformations ode solver dae solver graphical interface or text input for model definition pacs viewer loni tools data brain atlas imaging visualization web services medical simulation physics based animations collision response collision detection real time cvrg cardiovascular grid tools ontologies data integration realistic rendering provenance governance standard 2d and 3d cfd lattice boltzmann method fluid flows time varying signals import fuse store shared desktop musculo skeletal biomedical data dicom format gait analysis data finite element analysis results biochemical reaction network biomodels plotting bidomain agent ontology systems_biology modeling soft tissue modelling ecg aecg hl7 cardiotek converter methods medical images dicom processing visualization framework medical images browser test driven cellml
ToolKit Guidelines
ToolKit Content Guidelines
To assist potential contributors to the VPH ToolKit in preparing their content for submission, the VPH-NoE is developing a series of guideline documents. They cover the full range of issues affecting content providers, and together build to form a complete guide to the ideal content and presentation of materials offered for distribution via the Virtual Physiological Human Network of Excellence ToolKit Portal. They are being developed over a period of time, with revised versions being released on a periodic basis incorporating community feedback and the latest technological, sociological, academic, and legal developments.
The full set of Guideline Documents is summarised in brief below. To provide feedback on any of the documents, please leave a review on the relevant methods entry, or contact the responsible author directly.
| Guidance Area | Description |
|---|---|
| Tool characterisation |
The attributes important for inclusion in the documentation of Tools, including performance validation |
| Model characterisation |
The attributes important for inclusion in the documentation of Models, including performance validation |
| Data characterisation |
The attributes important for inclusion in the documentation of Data |
| Ontological annotation |
Methods of knowledge representation, in particular the significance, benefits and methods of ontological annotation of ToolKit content |
| Interoperability |
Key attributes and methods for enabling ToolKit content to be utilised in concert within a multistage workflow |
| Ethico-legal issues, provenance |
The inherited responsibilities that are attached to any item of ToolKit content – perhaps particularly data – including legal, ethical and territorial restrictions |
| Licensing |
The conditions that apply to the legitimate use of the content from an intellectual property standpoint |
| Usability and training |
The factors that are important for the easy use and ready acceptance of ToolKit content, taking into account the environment, the likely users and the need for interoperability. Additionally, the nature of training facilities of all types appropriate to particular content categories. |
ToolKit Guidelines

